SOFT : wgd
------
Site du soft: https://github.com/arzwa/wgd
-------------

LICENSE:
--------

GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/wgd
---------

Load binaries and environment:
------------------------------

-> Version acaddc0

#External software: MCL + BLAST + MUSCLE or MAFFT or PRANK + CODEML + PhyML or FastTree
module load bioinfo/mcl-14-137 bioinfo/ncbi-blast-2.7.1+ bioinfo/muscle3.8.31 bioinfo/paml4.9h bioinfo/PhyML-3.1 bioinfo/FastTree-2.1.10

module load bioinfo/wgd-acaddc0

Warning! By default 4 cpu are used on the node (for blast and mcl). Don't forget to adjust -n option of some wgd command and --cpus-per-task for Slurm

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/wgd/example_on_cluster

To submit: sbatch test_wgd-acaddc0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.