SOFT : vcf2maf
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Site du soft: https://github.com/mskcc/vcf2maf
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LICENSE:
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Apache License, Version 2.0

See software documentation for more informations.

Location: /usr/local/bioinfo/src/vcf2maf
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Load binaries and environment:
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-> Version v1.6.21


#Need samtools bcftools emsembl-vep
module load bioinfo/samtools-1.12 bioinfo/bcftools-1.12 bioinfo/ensembl-vep-v104.3

module load bioinfo/vcf2maf-1.6.21

Default vep path:  /usr/local/bioinfo/src/Ensembl-VEP/ensembl-vep-v104.3
Reference fasta must be unzip

Example directory for use on cluster:
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/usr/local/bioinfo/src/vcf2maf/example_on_cluster

To submit: sbatch test_vcf2maf-1.6.21.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.