SOFT : squeakr
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Site du soft: https://github.com/splatlab/squeakr
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LICENSE:
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BSD-3-Clause License

See software documentation for more informations.

Location: /usr/local/bioinfo/src/squeakr
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Load binaries and environment:
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-> Version 0d58134

module load bioinfo/squeakr-0d58134

Warning! By default all cpu are used on the node. Don't forget to adjust -t option of bamstats command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/squeakr/example_on_cluster

To submit: sbatch test_squeakr-0d58134.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.