SOFT : spliced_bam2gff
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Site du soft: https://github.com/nanoporetech/spliced_bam2gff
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LICENSE:
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MPL-2

See software documentation for more informations.

Location: /usr/local/bioinfo/src/spliced_bam2gff
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Load binaries and environment:
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-> Version v1.3

#Need Miniconda
module load system/Miniconda3
module load bioinfo/spliced_bam2gff-v1.3

Be careful, to unload, not use module purge but in order:

module unload bioinfo/spliced_bam2gff-v1.3
module unload system/Miniconda3

Warning! By default 8 cpus are used on the node. Don't forget to adjust -t option of spliced_bam2gff command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/spliced_bam2gff/example_on_cluster

To submit: sbatch test_spliced_bam2gff-v1.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.