SOFT : pggb
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Site du soft: https://github.com/pangenome/pggb
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/pggb
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Load binaries and environment:
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-> Version v0.5.3

#Need Miniconda
module load system/Miniconda3
module load bioinfo/pggb-v0.5.3

Be careful, to unload, not use module purge but in order:

module unload bioinfo/pggb-v0.5.3
module unload system/Miniconda3

Warning! By default 64 cpu are used on the node. Don't forget to adjust -t option of pggb command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/pggb/example_on_cluster

To submit: sbatch test_pggb-v0.5.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.