SOFT : miRDeep2 ------ Site du soft: https://www.mdc-berlin.de/n-rajewsky#t-data,software&resources ------------- LICENSE: -------- GPL-v3.0 See software documentation for more informations. Location: /usr/local/bioinfo/src/miRDeep2 --------- Load binaries and environment: ------------------------------ -> Version v2.0.0.8 Need bowtie,squid,randfold,VienneRNA: module load bioinfo/bowtie-1.2.1.1 bioinfo/squid-1.9g bioinfo/randfold-2.0.1 bioinfo/ViennaRNA-1.8.5 module load bioinfo/mirdeep2_0_0_8 -> Version v2.0.0.5 for monocot_specific_miRDeep2 (https://github.com/Rossifumi/monocot_specific_miRDeep2) Need bowtie,squid,randfold,VienneRNA: module load bioinfo/bowtie-1.2.1.1 bioinfo/squid-1.9g bioinfo/randfold-2.0.1 bioinfo/ViennaRNA-1.8.5 module load bioinfo/monocot_specific_miRDeep2 -> Version v2.0.0.5 for dicot_specific_miRDeep2 Need bowtie,squid,randfold,VienneRNA: module load bioinfo/bowtie-1.2.1.1 bioinfo/squid-1.9g bioinfo/randfold-2.0.1 bioinfo/ViennaRNA-1.8.5 module load bioinfo/dicot_specific_miRDeep2 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/miRDeep2/example_on_cluster To submit: sbatch test_mirdeep2_0_0_8.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.