SOFT : kmdiff (include kmtricks and kmindex)
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Site du soft: https://github.com/tlemane/kmdiff
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LICENSE:
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AGPL-3.0 license 

See software documentation for more informations.

Location: /usr/local/bioinfo/src/kmdiff
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Load binaries and environment:
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-> Version v1.0.1

#Need Miniconda
module load system/Miniconda3
module load bioinfo/kmdiff-v1.0.1

Be careful, to unload, not use module purge but in order:

module unload bioinfo/kmdiff-v1.0.1
module unload system/Miniconda3

Warning! By default 8 cpu are used on the node. Don't forget to adjust -t option of kmdiff command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/kmdiff/example_on_cluster

To submit: sbatch test_kmdiff-v1.0.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.