SOFT : iREAD
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Site du soft: https://github.com/genemine/iread
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LICENSE:
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Free for non-commercial use

See software documentation for more informations.

Location: /usr/local/bioinfo/src/iREAD
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Load binaries and environment:
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-> Version v0.8.9

#Need python,samtools,bedops
module load system/Python-3.6.3 bioinfo/samtools-1.3.1 bioinfo/bedops-v2.4.35

module load bioinfo/iread-v0.8.9

Warning! By default all cpu (-2) are used on the node. Don't forget to adjust -k option and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/iREAD/example_on_cluster

To submit: sbatch test_iread-v0.8.9.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.