SOFT : gargammel ------ Site du soft: https://github.com/grenaud/gargammel ------------- LICENSE: -------- NC See software documentation for more informations. Location: /usr/local/bioinfo/src/gargammel --------- Load binaries and environment: ------------------------------ -> Version v1b566b0 #Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2 #Need samtools module load bioinfo/samtools-1.8 module load bioinfo/gargammel-1b566b0 -> Version 4f50a6d #Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2 #Need samtools module load bioinfo/samtools-1.8 module load bioinfo/gargammel-4f50a6d -> Version 86c4cf2 #Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2 #Need samtools module load bioinfo/samtools-1.12 module load bioinfo/gargammel-86c4cf2 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/gargammel/example_on_cluster To submit: sbatch test_gargammel-1b566b0.sh or sbatch test_gargammel-4f50a6d.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.