SOFT : gargammel
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Site du soft: https://github.com/grenaud/gargammel
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LICENSE:
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NC

See software documentation for more informations.

Location: /usr/local/bioinfo/src/gargammel
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Load binaries and environment:
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-> Version v1b566b0

#Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py
module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2

#Need samtools
module load bioinfo/samtools-1.8

module load bioinfo/gargammel-1b566b0

-> Version 4f50a6d

#Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py
module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2

#Need samtools
module load bioinfo/samtools-1.8

module load bioinfo/gargammel-4f50a6d

-> Version 86c4cf2

#Need Python-2.7,Seq-Gen and ms to use ms2chromosomes.py
module load bioinfo/ms_2017 bioinfo/Seq-Gen-1.3.4 system/Python-2.7.2

#Need samtools
module load bioinfo/samtools-1.12

module load bioinfo/gargammel-86c4cf2


Example directory for use on cluster:
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/usr/local/bioinfo/src/gargammel/example_on_cluster

To submit: sbatch test_gargammel-1b566b0.sh or sbatch test_gargammel-4f50a6d.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.