SOFT : cutadapt
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Site du soft: https://cutadapt.readthedocs.io/en/stable/index.html
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LICENSE:
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MIT license

See software documentation for more informations.

Location: /usr/local/bioinfo/src/cutadapt
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Load binaries and environment:
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-> Version v1.8.3

*** With Python-2.7.2:

module load bioinfo/cutadapt-1.8.3-python-2.7.2
(to quit:  module unload  bioinfo/cutadapt-1.8.3-python-2.7.2 or module purge)

or

source /usr/local/bioinfo/src/cutadapt/cutadapt-1.8.3/venv_python-2.7.2/bin/activate
(to quit the python virtualenv: deactivate)


-> Version v1.14

*** With Python-2.7.2:

module load bioinfo/cutadapt-1.14-python-2.7.2
(to quit:  module unload bioinfo/cutadapt-1.14-python-2.7.2 or module purge)

or

source /usr/local/bioinfo/src/cutadapt/cutadapt-1.14/venv_python-2.7.2/bin/activate
(to quit the python virtualenv: deactivate)

*** With Python-3.4.3:

module load bioinfo/cutadapt-1.14-python-3.4.3
(to quit:  module unload bioinfo/cutadapt-1.14-python-3.4.3 or module purge)

or

source /usr/local/bioinfo/src/cutadapt/cutadapt-1.14/venv_python-3.4.3/bin/activate
(to quit the python virtualenv: deactivate)

-> Version v2.1

module load bioinfo/cutadapt-2.1

-> Version v2.8

module load bioinfo/cutadapt-2.8

-> Version v2.10

module load bioinfo/cutadapt-2.10

-> Version v3.4

module load bioinfo/cutadapt-3.4

-> Version v3.7

module load bioinfo/cutadapt-3.7


Example directory for use on cluster:
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/usr/local/bioinfo/src/cutadapt/example_on_cluster

To submit:
sbatch test_cutadapt-1.14-python-3.4.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.