SOFT : circtools ------ Site du soft: https://github.com/dieterich-lab/circtools ------------- LICENSE: -------- GPL-v3 See software documentation for more informations. Location: /usr/local/bioinfo/src/circtools --------- Load binaries and environment: ------------------------------ -> Version v1.1.0.8 #Need R, bedtools,STAR module load system/R-3.4.3 bioinfo/bedtools-2.27.1 bioinfo/STAR-2.6.0c module load bioinfo/circtools-1.1.0.8 #To use detect and reconstruct, add python2 (don't purge the module bioinfo/circtools-1.1.0.8) module load system/Python-2.7.2 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/circtools/example_on_cluster (#No simple data to test found, so just help command) To submit: sbatch test_circtools-1.1.0.8.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.