SOFT : circtools
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Site du soft: https://github.com/dieterich-lab/circtools
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/circtools
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Load binaries and environment:
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-> Version v1.1.0.8

#Need R, bedtools,STAR
module load system/R-3.4.3 bioinfo/bedtools-2.27.1 bioinfo/STAR-2.6.0c

module load bioinfo/circtools-1.1.0.8

#To use detect and reconstruct, add python2 (don't purge the module bioinfo/circtools-1.1.0.8)
module load system/Python-2.7.2


Example directory for use on cluster:
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/usr/local/bioinfo/src/circtools/example_on_cluster (#No simple data to test found, so just help command)

To submit: sbatch test_circtools-1.1.0.8.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.