SOFT : cd-hit
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Site du soft: cd-hit.org
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LICENSE:
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GPL-V2

See software documentation for more informations.

Location: /usr/local/bioinfo/src/cd-hit
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Load binaries and environment:
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-> Version v4.6.8

module load bioinfo/cdhit-4.6.8
To use psi-cd-hit: bioinfo/blast-2.2.26

-> Version v4.6.8_long (with MAX_SEQ=10000000)

module load bioinfo/cdhit-4.6.8_long
To use psi-cd-hit: bioinfo/blast-2.2.26

-> Version v4.8.1

module load bioinfo/cdhit-4.8.1
To use psi-cd-hit, need BLAST+: module load bioinfo/ncbi-blast-2.7.1+


Example directory for use on cluster:
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/usr/local/bioinfo/src/cd-hit/example_on_cluster

To submit: sbatch test_cdhit-4.6.8.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.