SOFT : canu
------
Site du soft: 
http://canu.readthedocs.io/en/latest/
-------------

LICENSE:
--------

Canu is derived from Celera Assembler and includes code from many other projects. Most, but not all, of the code is GPL licensed. See the README.licenses file and individual source code files for details.

See software documentation for more informations.

Location: /usr/local/bioinfo/src/canu
---------

Load binaries and environment:
------------------------------

-> Version v1.6

module load bioinfo/canu-1.6
or use absolute path:
/usr/local/bioinfo/src/canu/canu-1.6/Linux-amd64/bin

-> Version v1.7

module load bioinfo/canu-1.7
or use absolute path:
/usr/local/bioinfo/src/canu/canu-1.7/Linux-amd64/bin

-> Version v1.7.1

module load bioinfo/canu-1.7.1
or use absolute path:
/usr/local/bioinfo/src/canu/canu-1.7.1/Linux-amd64/bin

-> Version v1.8

module load bioinfo/canu-1.8
or use absolute path:
/usr/local/bioinfo/src/canu/canu-1.8/Linux-amd64/bin

-> Version v1.9

module load bioinfo/canu-1.9
or use absolute path:
/usr/local/bioinfo/src/canu/canu-1.9/Linux-amd64/bin

-> Version v2.0

module load bioinfo/canu-2.0
or use absolute path:
/usr/local/bioinfo/src/canu/canu-2.0/Linux-amd64/bin

-> Version v2.1

module load bioinfo/canu-2.1
or use absolute path:
/usr/local/bioinfo/src/canu/canu-2.1/build/bin

-> Version v2.1.1

module load bioinfo/canu-2.1.1
or use absolute path:
/usr/local/bioinfo/src/canu/canu-2.1.1/build/bin

-> Version v2.2

#Need gcc-9.3.0
module load compiler/gcc-9.3.0

module load bioinfo/canu-2.2

or use absolute path:
/usr/local/bioinfo/src/canu/canu-2.2/build/bin

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/canu/example_on_cluster
To submit:
sbatch test_canu_v1.6.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.