SOFT : bamtofastq
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Site du soft: https://github.com/10XGenomics/bamtofastq
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/bamtofastq
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Load binaries and environment:
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-> Version v1.3.5

module load bioinfo/bamtofastq-v1.3.5

#Warning! By default 4 threads are used on the node. Don't forget to adjust --nthreads option of bamtofastq command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/bamtofastq/example_on_cluster

To submit: sbatch test_bamtofastq-v1.3.5.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.