SOFT : VirSorter2
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Site du soft: https://github.com/jiarong/VirSorter2
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LICENSE:
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GPL-2.0

See software documentation for more informations.

Location: /usr/local/bioinfo/src/VirSorter2
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Load binaries and environment:
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-> Version v2.2.3

#Need Miniconda
module load system/Miniconda3
module load bioinfo/VirSorter2-v2.2.3

Be careful, to unload, not use module purge but in order:

module unload bioinfo/VirSorter2-v2.2.3
module unload system/Miniconda3


You have to install the databanks in your directory (need write permissions):
# run setup
virsorter setup -d /work/username/db -j 4

$ virsorter run --help
  -d, --db-dir PATH             database directory, default to the --db-dir




Example directory for use on cluster:
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/usr/local/bioinfo/src/VirSorter2/example_on_cluster

To submit: sbatch test_VirSorter2-v2.2.3.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.