SOFT : Strelka
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Site du soft: https://github.com/Illumina/strelka (https://sites.google.com/site/strelkasomaticvariantcaller/home for v1)
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Strelka
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Load binaries and environment:
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-> Version v1.0.15

#Need Python
module load system/Python2.7.2

module load bioinfo/strelka-1.0.15

-> Version v2.9.9

#Need Python
module load system/Python2.7.15

module load bioinfo/strelka-2.9.9

Warning! In local mode runWorkflow.py use all cores of a node by default.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Strelka/example_on_cluster

To submit: sbatch test_strelka-2.9.9.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.