SOFT : SortMeRNA
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Site du soft: http://bioinfo.lifl.fr/RNA/sortmerna/
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LICENSE:
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LGPL

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SortMeRNA
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Load binaries and environment:
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-> Version v2.1b

module load bioinfo/sortmerna-2.1b

-> Version 19256e7 (3.0.0 beta)

# Need gcc-7.2.0
module load compiler/gcc-7.2.0

module load bioinfo/sortmerna-19256e7

-> Version v4.0.0

module load bioinfo/sortmerna-4.0.0

-> Version v4.3.2

module load bioinfo/sortmerna-4.3.2


Warning! By default all cpu are used on the node. Don't forget to adjust --thread  option of sortmerna command and --cpus-per-task for Slurm

Example directory for use on cluster:
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/usr/local/bioinfo/src/SortMeRNA/example_on_cluster

To submit: sbatch test_sortmerna-2.1b.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.