SOFT : SnpEff ------ Site du soft: http://snpeff.sourceforge.net/index.html https://pcingola.github.io/SnpEff/ ------------- LICENSE: -------- LGPLv3 See software documentation for more informations. Location: /usr/local/bioinfo/src/SnpEff --------- Load binaries and environment: ------------------------------ -> Version v4.3T module load bioinfo/SnpEff-4.3T and: java -jar $SNPEFF_HOME/snpEff.jar -h java -jar $CLINEFF_HOME/ClinEff.jar -h -> Version 3.6 module load bioinfo/SnpEff-3.6 and: java -jar $SNPEFF_HOME/snpEff.jar -h -> Version 5.1 #Need Java12 module load system/jdk-12.0.2 module load bioinfo/SnpEff-5.1 and: java -jar $SNPEFF_HOME/snpEff.jar -h Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/SnpEff/example_on_cluster To submit: sbatch test_SnpEff-4.3T.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.