SOFT : Snippy
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Site du soft: https://github.com/tseemann/snippy
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LICENSE:
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GPL-v2

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Snippy
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Load binaries and environment:
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-> Version v4.3.6

#Need Miniconda
module load system/Miniconda3-4.4.10

module load bioinfo/snippy-v4.3.6

Be careful, to unload, not use module purge but in order:

module unload bioinfo/snippy-v4.3.6
module unload system/Miniconda3-4.4.10

-> Version v4.6.0

#Need Miniconda
module load system/Miniconda3

module load bioinfo/snippy-v4.6.0

Be careful, to unload, not use module purge but in order:

module unload bioinfo/snippy-v4.6.0
module unload system/Miniconda3

Warning! Default cpu:8 (don't forget to adjust --cpu option and --cpus-per-task for Slurm )

Example directory for use on cluster:
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/usr/local/bioinfo/src/Snippy/example_on_cluster

To submit: sbatch test_snippy-v4.3.6.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.