SOFT : Singularity (Access on demand)
------
Site du soft: https://singularity.lbl.gov/
-------------

LICENSE:
--------

Free but see http://singularity.lbl.gov/docs-license

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Singularity
---------

Load binaries and environment:
------------------------------

-> Version v2.5.1

#Load binary in environment, disable cache and mount user's home, save and work with image
module load system/singularity-2.5.1

-> Version v3.0.1

#Load binary in environment, disable cache and mount user's home, save and work with image
module load system/singularity-3.0.1

-> Version v3.5.3

#Load binary in environment, disable cache and mount user's home, save and work with image
module load system/singularity-3.5.3

-> Version v3.6.4

#Load binary in environment, disable cache and mount user's home, save and work with image
module load system/singularity-3.6.4

Warning v3.6.4: singularity pull doesn't work with docker hub:
To make it work, export this variables avfter module load singularity:

export SINGULARITY_DISABLE_CACHE=False
export SINGULARITY_CACHEDIR=<path_to_your workdir>

-> Version v3.7.3

#Load binary in environment, disable cache and mount user's home, save and work with image
module load system/singularity-3.7.3


Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/Singularity/example_on_cluster

To submit: sbatch test_singularity-2.5.1.sh or sbatch test_singularity-3.0.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.