SOFT : Salmon
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Site du soft: https://github.com/COMBINE-lab/salmon
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Salmon
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Load binaries and environment:
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-> Version v0.10.0

module load bioinfo/salmon-0.10.0

-> Version v0.11.0

module load bioinfo/salmon-0.11.0

-> Version  v0.99.0-beta2

module load bioinfo/salmon_0.99.0_beta2

-> Version  v1.3.0

module load bioinfo/salmon-1.3.0

-> Version  v1.4.0

module load bioinfo/salmon-1.4.0

-> Version  v1.5.1

module load bioinfo/salmon-1.5.1

-> Version  v1.9.0

module load bioinfo/salmon-1.9.0


Be careful!: The default behavior is for Salmon to probe the number of available hardware threads and to use this number. Thus, if you want to use fewer threads (e.g., if you are running multiple instances of Salmon simultaneously), you will likely want to set this option explicitly in accordance with the desired per-process resource usage.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Salmon/example_on_cluster

To submit: sbatch test_salmon-0.10.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.