SOFT : SRAssembler
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Site du soft: https://github.com/BrendelGroup/SRAssembler
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SRAssembler
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Load binaries and environment:
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-> Version v1.0.0

#If MPI version used (seems functionnal only with one node...)
module load compiler/gcc-4.8.2 mpi/openmpi-2.1.2

#Need some dependencies: Blast+, Vmatch, SOAPdenovo2 or ABySS, GeneSeqer or Genomethreader, SNAP
module load bioinfo/ncbi-blast-2.10.0+ bioinfo/vmatch-2.3.0 bioinfo/SOAPdenovo2-r241 bioinfo/abyss-2.1.5 bioinfo/GeneSeqer-v5.2 bioinfo/GenomeThreader-1.7.1 bioinfo/SNAP-a89d68e

module load bioinfo/SRAssembler-v1.0.0

Example directory for use on cluster:
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/usr/local/bioinfo/src/SRAssembler/example_on_cluster

To submit: sbatch test_SRAssembler-v1.0.0.sh or sbatch test_SRAssembler-v1.0.0_MPI.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.