SOFT : SRAToolkit ------ Site du soft: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=announcement2 ------------- LICENSE: -------- See https://github.com/ncbi/sra-tools/blob/master/LICENSE See software documentation for more informations. Location: /usr/local/bioinfo/src/SRAToolkit --------- Load binaries and environment: ------------------------------ -> Version v2.8.2-1 module load bioinfo/sratoolkit.2.8.2-1 or use absolute path: /usr/local/bioinfo/src/SRAToolkit/sratoolkit.2.8.2-1/bin/ -> Version v2.9.6-1 module load bioinfo/sratoolkit.2.9.6-1 or use absolute path: /usr/local/bioinfo/src/SRAToolkit/sratoolkit.2.9.6-1/bin/ -> Version v2.11.3 module load bioinfo/sratoolkit.2.11.3 or use absolute path: /usr/local/bioinfo/src/SRAToolkit/sratoolkit.2.11.3/bin/ -> Version v3.0.0 module load bioinfo/sratoolkit.3.0.0 or use absolute path: /usr/local/bioinfo/src/SRAToolkit/sratoolkit.3.0.0/bin/ Run vdb-config to configure under your login before use: https://akiomiyao.github.io/ped/sratoolkit/index.html Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/SRAToolkit/example_on_cluster To submit: sbatch test_sratoolkit.2.8.2-1.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.