SOFT : SMRTLink
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Site du soft: https://www.pacb.com/support/software-downloads/
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LICENSE:
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For Research Use Only.
Please refer to the applicable Pacific Biosciences Terms and Conditions of Sale and the applicable license terms at
http://www.pacb.com/legal-and-trademarks/product-license-and-use-restrictions

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SMRTLink
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Load binaries and environment:
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-> Version v5.0.1

module load bioinfo/SMRTLink_v5.0.1

-> Version  v5.1.0

module load bioinfo/SMRT_Link_v5.1.0

-> Version v6.0.0

module load bioinfo/SMRTLink_v6.0.0

-> Version v7.0.0

module load bioinfo/SMRTLink_v7.0.0

-> Version v8.0.0

module load bioinfo/SMRTLink_v8.0.0

-> Version v9.0.0

module load bioinfo/SMRTLink_v9.0.0

-> Version v10.1

module load bioinfo/SMRTLink_v10.1

-> Version v10.2

module load bioinfo/SMRTLink_v10.2

-> Version v11.0

module load bioinfo/SMRTLink_v11.0


Warning! Default cpu for ccs: all cpu on node. Don't forget to adjust -j option of ccs command and --cpus-per-task slurm option.

Example directory for use on cluster:
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/usr/local/bioinfo/src/SMRTLink/example_on_cluster

To submit: sbatch test_SMRTLink_v5.0.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.