SOFT : S3V2_IDEAS_ESMP
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Site du soft: https://github.com/guanjue/S3V2_IDEAS_ESMP
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/S3V2_IDEAS_ESMP
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Load binaries and environment:
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-> Version d05d3e0

#Need R, bedtools
module load system/R-4.1.1_gcc-9.3.0 bioinfo/bedtools-2.27.1

module load bioinfo/S3V2_IDEAS_ESMP-d05d3e0

Script_dir: /usr/local/bioinfo/src/S3V2_IDEAS_ESMP/S3V2_IDEAS_ESMP-d05d3e0/bin/

Warning! By default 2 cpu are used on the node. Don't forget to adjust -t option of S3V2_IDEAS_pipeline.pycommand and --cpus-per-task option for Slurm.

Create and go to the output directory to launch the script S3V2_IDEAS_pipeline.py 

Warning! The data directory is writable by everyone. A tip: customize the name of the genome (ex: -g <login>_mm10) so that it is not overwritten by other users.


Example directory for use on cluster:
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/usr/local/bioinfo/src/S3V2_IDEAS_ESMP/example_on_cluster

To submit: sbatch test_S3V2_IDEAS_ESMP-d05d3e0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.