SOFT : RepeatMasker
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Site du soft: http://www.repeatmasker.org
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LICENSE:
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Open Software License v.2.1/ See /usr/local/bioinfo/src/RepeatMasker/RepeatMasker-4-0-7/license.tx

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RepeatMasker
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Load binaries and environment:
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-> Version 4-0-7 with perl-5.10.1

#Need perl-5.10.1
module load system/perl-5.10.1

module load bioinfo/RepeatMasker-4-0-7_perl-5.10.1


-> Version v4.0.7

module load bioinfo/RepeatMasker-4-0-7

-> Version v4.1.0

module load bioinfo/RepeatMasker-4.1.0

#Need Python3
module load system/Python-3.6.3

module load bioinfo/RepeatMasker-4.1.2-p1


To obtain a Repbase: ask for license and download the library on http://www.girinst.org. Install the library under your work space.


Example directory for use on cluster:
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/usr/local/bioinfo/src/RepeatMasker/example_on_cluster

To submit: sbatch test_RepeatMasker-4-0-7.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.