SOFT : RepeatExplorer
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Site du soft: https://bitbucket.org/petrnovak/repex_tarean/src/devel/
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LICENSE:
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NC

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RepeatExplorer
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Load binaries and environment:
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-> Version v0.3.8-464_devel

#Need Miniconda
module load system/Miniconda3-4.7.10
module load bioinfo/RepeatExplorer2_TAREAN-v0.3.8-464_devel

Be careful, to unload, not use module purge but in order:

module unload bioinfo/RepeatExplorer2_TAREAN-v0.3.8-464_devel
module unload system/Miniconda3-4.7.10

#Warning! By default all cpu are used on the node. Don't forget to adjust -c option of seqclust command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/RepeatExplorer/example_on_cluster

To submit: sbatch test_RepeatExplorer2_TAREAN-v0.3.8-464_devel.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.