SOFT : RNAscClust
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Site du soft: http://www.bioinf.uni-freiburg.de/Software/RNAscClust/
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RNAscClust
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Load binaries and environment:
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-> Version v1.1.1

#Need Python2
module load system/Python-2.7.2
#Need PETfold module for env variable
module load bioinfo/PETfold-v2.0
#Need Blast for CMfinder
module load bioinfo/ncbi-blast-2.10.0+
#Need ViennaRNA and T-COFFEE for locARNA
module load bioinfo/ViennaRNA-2.4.3 bioinfo/T-COFFEE_11.00.8cbe486

module load bioinfo/rnascclust-v1.1.1

To adapt config file:cp /usr/local/bioinfo/src/RNAscClust/rnascclust-v1.1.1/Config/default.config
Exemple config dependencies: /usr/local/bioinfo/src/RNAscClust/example_on_cluster/bilp13.config
No cluster mode (only for SGE)

Example directory for use on cluster:
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/usr/local/bioinfo/src/RNAscClust/example_on_cluster

To submit: sbatch test_rnascclust-v1.1.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.