SOFT : RGAugury
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Site du soft: https://bitbucket.org/yaanlpc/rgaugury
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LICENSE:
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GPL

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RGAugury
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Load binaries and environment:
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-> Version v2.2

#Need  jdk-12.0.2 , Python-3.6.3, interproscan-5.51-85.0, Blast+, Hmmer3.2.1, CVIT, PfamScan
module load system/jdk-12.0.2 system/Python-3.6.3  bioinfo/interproscan-5.51-85.0  bioinfo/ncbi-blast-2.13.0+ bioinfo/hmmer-3.2.1 bioinfo/cvit.1.2.1 bioinfo/PfamScan-v1.6

module load bioinfo/rgaugury-v2.2

Warning! By default 2 cpu are used on the node. Don't forget to adjust -c option of RGAugury.pl command and --cpus-per-task option for Slurm.

Default PFAMDB is set by module (/work/bank/ebi/pfam/current/hmm/)


Example directory for use on cluster:
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/usr/local/bioinfo/src/RGAugury/example_on_cluster

To submit: sbatch test_rgaugury-v2.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.