SOFT : REPdenovo
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Site du soft: https://github.com/simoncchu/REPdenovo
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/REPdenovo
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Load binaries and environment:
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-> Version 2664952

#Need Python 2.7,Jellyfish,Velvet,bwa,bamtools bamtools version is a prerequis), samtools
module load system/Python-2.7.2 bioinfo/jellyfish-2.3.0 bioinfo/velvet_1.2.10 bioinfo/bwa-0.7.17 bioinfo/bamtools-2.5.0 bioinfo/samtools-1.11

module load bioinfo/REPdenovo-2664952

Example directory for use on cluster:
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/usr/local/bioinfo/src/REPdenovo/example_on_cluster

Config path example: /usr/local/bioinfo/src/REPdenovo/example_on_cluster/config_file

To submit: sbatch test_REPdenovo-2664952.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.