SOFT : REDItools ------ Site du soft: https://github.com/BioinfoUNIBA/REDItools and https://github.com/BioinfoUNIBA/REDItools2 ------------- LICENSE: -------- MIT See software documentation for more informations. Location: /usr/local/bioinfo/src/REDItools --------- Load binaries and environment: ------------------------------ -> Version v1.0.4 module load bioinfo/REDItools-1.0.4 #To perform Blat correction and format alignment exchange, need blat, samtools and tabix: module load bioinfo/blatSuite.36 bioinfo/samtools-1.8 bioinfo/tabix-0.2.5 -> Version v2.0 #Need samtools and tabix for serial script module load bioinfo/samtools-1.8 bioinfo/tabix-0.2.5 #Need mpi,samtools,tabix for run in MPI mode module load compiler/gcc-4.8.2 mpi/openmpi-2.1.2 bioinfo/samtools-1.8 bioinfo/tabix-0.2.5 module load bioinfo/REDItools-2.0 Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/REDItools/example_on_cluster and /usr/local/bioinfo/src/REDItools/example_on_cluster/REDItools-2.0 To submit: sbatch test_.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.