SOFT : QUAST ------ Site du soft: http://cab.spbu.ru/files/quast/releases/manual.html#sec1 ------------- LICENSE: -------- GPL-v2 See software documentation for more informations. Location: /usr/local/bioinfo/src/QUAST --------- Load binaries and environment: ------------------------------ -> Version v2.3 #Need Python module load system/Python-2.7.2 module load bioinfo/quast-2.3 WARNING!: default threads used: all cpu on node. Adjust -T option of quast.py and --cpus-per-task for Slurm -> Version v5.0.0rc1 # Need R module load system/R-3.4.3 module load bioinfo/quast-5.0.0rc1 WARNING!: default threads used: 16 #If need R (you can choose your version) module load system/R-3.4.3 module load bioinfo/quast-5.0.2 WARNING!: default threads used: 25% of CPUs. GeneMark license key: cp /usr/local/bioinfo/src/GeneMark/gm_key_64 ~/.gm_key Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/QUAST/example_on_cluster To submit: sbatch test_quast-5.0.0rc1.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.