SOFT : Purge_Haplotigs
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Site du soft: https://bitbucket.org/mroachawri/purge_haplotigs
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LICENSE:
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Free

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Purge_Haplotigs
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Load binaries and environment:
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-> Version v1.0.4

#Need bedtools, samtools, minimap2, MUMmer, R
module load bioinfo/bedtools-2.27.1 bioinfo/samtools-1.8 bioinfo/minimap2-2.11 bioinfo/mummer-4.0.0beta2 system/R-3.4.3

module load bioinfo/purge_haplotigs-1.0.4

Warning! Default threads number: 4 (don't forget to adjust -t options of purge_haplotigs and --cpus-per-task for Slurm)

Example directory for use on cluster:
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/usr/local/bioinfo/src/Purge_Haplotigs/example_on_cluster

To submit: sbatch test_purge_haplotigs-1.0.4.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.