SOFT : Purge_Dups ------ Site du soft: https://github.com/dfguan/purge_dups ------------- LICENSE: -------- MIT See software documentation for more informations. Location: /usr/local/bioinfo/src/Purge_Dups --------- Load binaries and environment: ------------------------------ -> Version 1964aaa #Need minimap2 and/or KMC module load bioinfo/minimap2-2.5 bioinfo/KMC-v3.0.0 module load bioinfo/purge_dups-1964aaa -> Version v1.2.5 #Need minimap2 and/or KMC module load bioinfo/minimap2-2.5 bioinfo/KMC-v3.0.0 module load bioinfo/purge_dups-v1.2.5 To use Busco, lineage datasets are here: /usr/local/bioinfo/src/BUSCO (datasets or datasets_odb10). Example use in config.json: "busco": { "lineage": "/usr/local/bioinfo/src/BUSCO/datasets_odb10/insecta_odb10", Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/Purge_Dups/example_on_cluster To submit: sbatch test_purge_dups-1964aaa.sh (No dataset found so just help option) See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.