SOFT : ProtHint
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Site du soft: https://github.com/gatech-genemark/ProtHin
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LICENSE:
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Free for non-commercial use. See https://github.com/gatech-genemark/ProtHint/blob/master/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ProtHint
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Load binaries and environment:
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-> Version v2.6.0

#Need Python>=3.3:
module load system/Python-3.6.3
#Need GeneMark-ES
module load bioinfo/GeneMark-v4.33

module load bioinfo/ProtHint-2.6.0

#To use Genemark-ES:
cp /usr/local/bioinfo/src/GeneMark/gmes_petap/gm_key ~/.gm_key

Warning! By default all cpu are used on the node. Don't forget to adjust --threads option of prothint command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/ProtHint/example_on_cluster

To submit: sbatch test_ProtHint-2.6.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.