SOFT : PlasmidFinder
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Site du soft: https://bitbucket.org/genomicepidemiology/plasmidfinder
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LICENSE:
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Apache License Version 2.0 

See software documentation for more informations.

Location: /usr/local/bioinfo/src/PlasmidFinder
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Load binaries and environment:
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-> Version v2.1.6

#Need KMA, BLAST(>=2.8.1)
module load bioinfo/kma-v1.2.10a bioinfo/ncbi-blast-2.12.0+

module load bioinfo/plasmidfinder-2.1.6

Example directory for use on cluster:
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/usr/local/bioinfo/src/PlasmidFinder/example_on_cluster

To submit: sbatch test_plasmidfinder-2.1.6.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.