SOFT : PlasForest
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Site du soft: https://github.com/leaemiliepradier/PlasForest
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/PlasForest
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Load binaries and environment:
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-> Version v1.3

#Need Python3, Blast+
module load system/Python-3.6.3 bioinfo/ncbi-blast-2.13.0+

module load bioinfo/PlasForest-v1.3

#Required to run PlasForest from another directory than the installation one.
cp /usr/local/bioinfo/src/PlasForest/PlasForest-v1.3/epost.dt /usr/local/bioinfo/src/PlasForest/PlasForest-v1.3/plasmid_refseq.*  /usr/local/bioinfo/src/PlasForest/PlasForest-v1.3/plasforest.sav /path_to_your_working_directory

Fasta file must be writable.

Example directory for use on cluster:
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/usr/local/bioinfo/src/PlasForest/example_on_cluster

To submit: sbatch test_PlasForest-v1.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.