SOFT : Pilon ------ Site du soft: https://github.com/broadinstitute/pilon ------------- LICENSE: -------- GPL v2 See software documentation for more informations. Location: /usr/local/bioinfo/src/Pilon --------- Load binaries and environment: ------------------------------ -> Version v1.22 module load bioinfo/pilon-v1.22 java -Xmx4G -jar $PILON --help java -Xmx4G -jar $PILON --genome genome.fa --frags file.bam ... or use absolute path: java -Xmx4g -jar /usr/local/bioinfo/src/Pilon/pilon-v1.22/pilon-1.22.jar --help -> Version v1.23 module load bioinfo/pilon-v1.23 java -Xmx4G -jar $PILON --help java -Xmx4G -jar $PILON --genome genome.fa --frags file.bam ... or use absolute path: java -Xmx4g -jar /usr/local/bioinfo/src/Pilon/pilon-v1.23/pilon-1.23.jar --help Example directory for use on cluster: ------------------------------------- /usr/local/bioinfo/src/Pilon/example_on_cluster To submit: sbatch test_pilon-v1.22.sh See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.