SOFT : PhyML
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Site du soft: http://www.atgc-montpellier.fr/phyml/usersguide.php
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/PhyML
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Load binaries and environment:
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-> Version v3.1

module load bioinfo/PhyML-3.1

-> Version v3.3.20211231

Without MPI, just: 
module load bioinfo/phyml-3.3.20211231

With MPI:

#Need gcc compiler 4.8.5 and openmpi-2.1.2
module load compiler/gcc-4.8.5 mpi/openmpi-2.1.2

module load bioinfo/phyml-3.3.20211231

phyml-mpi ...


Example directory for use on cluster:
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/usr/local/bioinfo/src/PhyML/example_on_cluster

To submit: sbatch test_PhyML-3.1.sh

or with MPI: 
cd /usr/local/bioinfo/src/PhyML/example_on_cluster/phyml-3.3.20211231_MPI

To submit: sbatch test_phyml-3.3.20211231_MPI.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.