SOFT : Pacasus
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Site du soft: https://github.com/swarris/Pacasus
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Pacasus
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Load binaries and environment:
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-> Version v1.1

module load bioinfo/Pacasus-v1.1
Use --device_type=GPU --platform_name=NVIDIA --framework=OpenCL et Slurm option -p interq --constraint=K40

-> version 1.1 on CPU: to run on CPU (for big file or a large memory needed)

module load bioinfo/Pacasus-v1.1_CPU 
Use --device_type=CPU --platform_name=Intel --framework=opencl et Slurm option -p interq

Example directory for use on cluster:
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/usr/local/bioinfo/src/Pacasus/example_on_cluster

To submit: sbatch test_Pacasus-v1.1.1.sh or sbatch  sbatch test_Pacasus-v1.1_CPU.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.