SOFT : Merqury
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Site du soft: https://github.com/marbl/merqury
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LICENSE:
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See https://github.com/marbl/merqury/blob/master/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Merqury
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Load binaries and environment:
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-> Version v1.3

#Need Meryl v1.3, R 4.0.3+, bedtools,samtools
module load bioinfo/meryl-1.3 system/R-4.0.4_gcc-9.3.0 bioinfo/bedtools-2.27.1 bioinfo/samtools-1.11

module load bioinfo/merqury-1.3

$MERQURY/merqury.sh ...

#Warning! By default all cpu are used on the node. To limit threads use export OMP_NUM_THREADS=<nb cpus> and don't forget to adjust to --cpus-per-task option for Slurm.
(Les erreurs de module sont liées au code: https://github.com/marbl/merqury/issues/14. Normalement sans conséquence sur le calcul.)

Example directory for use on cluster:
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/usr/local/bioinfo/src/Merqury/example_on_cluster

To submit: sbatch test_merqury-1.3.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.