SOFT : MMseqs2
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Site du soft: https://github.com/soedinglab/MMseqs2
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/MMseqs2
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Load binaries and environment:
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-> Version v9-d36de

#Need Miniconda
module load system/Miniconda3-4.4.10

module load bioinfo/mmseqs2-v9-d36de

Be careful, to unload, not use module purge but in order:

module unload bioinfo/mmseqs2-v9-d36de
module unload system/Miniconda3-4.4.10

-> Version v13.45111

#Need Miniconda
module load system/Miniconda3-4.7.10
module load bioinfo/mmseqs2-v13.45111

Be careful, to unload, not use module purge but in order:

module unload bioinfo/mmseqs2-v13.45111
module unload system/Miniconda3-4.7.10

-> Version v14-7e284

#Need Miniconda
module load system/Miniconda3
module load bioinfo/mmseqs2-v14-7e284

Be careful, to unload, not use module purge but in order:

module unload bioinfo/mmseqs2-v14-7e284
module unload system/Miniconda3



Warning! By default all cpu are used on the node. Don't forget to adjust --threads option of some mmseqs command and --cpus-per-task for Slurm

Example directory for use on cluster:
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/usr/local/bioinfo/src/MMseqs2/example_on_cluster

To submit: sbatch test_mmseqs2-v9-d36de.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.