SOFT : MITGARD
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Site du soft: https://github.com/pedronachtigall/MITGARD
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/MITGARD
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Load binaries and environment:
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-> Version v1.0

#Need python3, samtools , bowtie2, minimap2, trinity, spades
module load system/Python-3.6.3 bioinfo/samtools-1.9 bioinfo/bowtie2-2.3.5.1 bioinfo/minimap2-2.24 bioinfo/trinityrnaseq-v2.8.5 bioinfo/SPAdes-3.14.1 

# If need mitoZ
module load system/Miniconda3-4.7.10 bioinfo/MitoZ_v2.4-alpha

module load bioinfo/MITGARD-v1.0

Example directory for use on cluster:
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/usr/local/bioinfo/src/MITGARD/example_on_cluster

To submit: sbatch test_MITGARD-v1.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.