SOFT : MEGA-CC
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Site du soft: https://www.megasoftware.net/
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LICENSE:
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Free for use in research and education. see conditions in /usr/local/bioinfo/src/MEGA-CC/megacc-7.0.26-1/usageAgreement.txt.

See software documentation for more informations.

Location: /usr/local/bioinfo/src/MEGA-CC
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Load binaries and environment:
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-> Version v7.0.26-1

You must be in graphical: ssh -X connection on login node
To generate the .mao file necessary for using the command line, you must launch the graphical interface (megax command) on the connection node. Only use it to generate this file, it is forbidden to calculate on the login nodes.
Then, to run command line you be in interactive and graphical mode:
$ srun --x11 --cpus-per-task <nb_threads> --pty bash 
$ module load bioinfo/megacc-7.0.26-1

For run in sbatch mode, use xvbf-run -a (see example)

-> Version v10.1.8

You must be in graphical: ssh -X connection on login node
To generate the .mao file necessary for using the command line, you must launch the graphical interface (megax command) on the connection node. Only use it to generate this file, it is forbidden to calculate on the login nodes.
Then, to run command line you be in interactive and graphical mode:
$ srun --x11 --cpus-per-task <nb_threads> --pty bash
$ module load bioinfo/megacc-10.1.8

For run in sbatch mode, use xvbf-run -a (see example)




Example directory for use on cluster:
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/usr/local/bioinfo/src/MEGA-CC/example_on_cluster

To submit: sbatch test_megacc-7.0.26-1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.