SOFT : LongRanger
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Site du soft: https://support.10xgenomics.com/genome-exome/software/pipelines/latest/what-is-long-ranger
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LICENSE:
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10x Genomics End User Software License Agreement:https://support.10xgenomics.com/genome-exome/software/downloads/latest

See software documentation for more informations.

Location: /usr/local/bioinfo/src/LongRanger
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Load binaries and environment:
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-> Version v2.1.6

module load bioinfo/bcl2fastq-2.20.0
module load bioinfo/longranger-2.1.6

-> Version v2.2.2

module load bioinfo/bcl2fastq-2.20.0
module load bioinfo/longranger-2.2.2


Example directory for use on cluster:
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/usr/local/bioinfo/src/LongRanger/example_on_cluster

To submit:
sbatch test_longranger-2.1.6.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.