SOFT : LRScaf
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Site du soft: https://github.com/shingocat/lrscaf
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/LRScaf
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Load binaries and environment:
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-> Version v1.1.2

module load bioinfo/pilon-v1.22
java -Xmx4G -jar $LRSCAF --help
java -Xmx4G -jar $LRSCAF -x <configure.xml>
java -Xmx4G -jar $LRSCAF -c <draft_assembly.fasta> -a <alignment.m4> -t <m4> -o <output_foloder> [options]

or use absolute path:  java -Xmx4g -jar /usr/local/bioinfo/src/LRScaf/lrscaf-1.1.2/target/LRScaf-1.1.2.jar --help

Example directory for use on cluster:
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/usr/local/bioinfo/src/LRScaf/example_on_cluster

To submit: sbatch test_lrscaf-1.1.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.