SOFT : KofamScan
------
Site du soft: https://github.com/takaram/kofam_scan
-------------

LICENSE:
--------

MIT License

See software documentation for more informations.

Location: /usr/local/bioinfo/src/KofamScan
---------

Load binaries and environment:
------------------------------

-> Version 1.3.0

module load system/ruby-2.5.0
module load bioinfo/hmmer-3.2.1
module load system/parallel-20220822
module load bioinfo/kofam_scan-v1.3.0

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/KofamScan/example_on_cluster

profiles are located into following folder:
/usr/local/bioinfo/src/KofamScan/KOfam_202304/profiles/
The default behaviour is to use all

The default configuration tries to launch 8 HMMER processes in parallel: #SBATCH  -c 8


Remark: a folder named "tmp" is created in the same directory than the query file, and is not removed at the end of processing.

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.