SOFT : InterProScan
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Site du soft: https://www.ebi.ac.uk/interpro/
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/InterProScan
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Load binaries and environment:
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-> Version v5.29-68.0

#Need Ptyhon-2.7.2
module load system/Python-2.7.2

module load bioinfo/interproscan-5.29-68.0

-> Version v5.44-79.0

#Need Java 11, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.44-79.0

-> Version v5.48-83.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.48-83.0

(bug: https://github.com/ebi-pf-team/interproscan/issues/180)

-> Version v5.51-85.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.51-85.0

-> Version v5.52-86.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.52-86.0

-> Version v5.54-87.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.54-87.0

-> Version v5.55-88.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.55-88.0

-> Version v5.59-91.0

#Need Java 12, Python3
module load system/jdk-12.0.2 system/Python-3.6.3

module load bioinfo/interproscan-5.59-91.0



Example directory for use on cluster:
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/usr/local/bioinfo/src/InterProScan/example_on_cluster

To submit: sbatch test_interproscan-5.29-68.0_cluster_mode.sh or sbatch test_interproscan-5.29-68.0_standalone_mode.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.