SOFT : IRFinder
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Site du soft: https://github.com/williamritchie/IRFinder https://github.com/RitchieLabIGH/IRFinder
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/IRFinder
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Load binaries and environment:
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-> Version v1.2.5

#Need STAR and Bedtools
module load bioinfo/STAR-2.4.0i bioinfo/bedtools-2.27.1

module load bioinfo/IRFinder-1.2.5
  

-> Version v2.0.1

#Need ggc-11.3.0, STAR, samtools,bedtools,minimap2,SUPPA2 (in Python-3.6.3)
module load compiler/gcc-11.3.0 bioinfo/STAR-2.4.0i bioinfo/samtools-1.16.1 bioinfo/bedtools-2.27.1 bioinfo/minimap2-2.24 system/Python-3.6.3

module load bioinfo/IRFinder-2.0.1


Warning! Default cpu is the number of physical CPU (20). Don't forget to adjust -t option of IRfinder and --cpus-per-task for Slurm

Example directory for use on cluster:
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/usr/local/bioinfo/src/IRFinder/example_on_cluster

To submit: sbatch test_IRFinder-1.2.5.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.