SOFT : HybPiper
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Site du soft: https://github.com/mossmatters/HybPiper
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/HybPiper
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Load binaries and environment:
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-> Version v1.3.1

# Need Python-2.7.2, exonerate, blast, spades, paralellel, bwa, samtools
module load system/Python-2.7.2 bioinfo/exonerate-2.2.0 bioinfo/ncbi-blast-2.2.29+ bioinfo/SPAdes-3.11.1 system/parallel-20180122 bioinfo/bwa-0.7.15 bioinfo/samtools-1.8

module load bioinfo/HybPiper-1.3.1

Warning! Default cpu:all cpu on node (don't forget to adjust --cpu for python scripts and --cpus-per-task for Slurm)

Example directory for use on cluster:
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/usr/local/bioinfo/src/HybPiper/example_on_cluster

To submit: sbatch test_HybPiper-1.3.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.